Whole-genome sequencing of bacteria from a hospital setting - SRA

SRX21171264: Whole-genome sequencing of bacteria from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 658,256 spots, 351.5M bases, 219.4Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN36727276 • SRS18432608 • All experiments • All runs

Organism: Enterococcus faecium

Library:

Name: BWH_1312_E_faem

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 658,256 spots, 351.5M bases, 219.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR25437480	658,256	351.5M	219.4Mb	2023-07-27

ID:: 28606598

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